Botswana Laboratory HIE Workflow Implementation Guide
0.2.0 - ci-build
Botswana Laboratory HIE Workflow Implementation Guide - Local Development build (v0.2.0). See the Directory of published versions
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:Bundle;
fhir:nodeRole fhir:treeRoot;
fhir:Resource.id [ fhir:value "example-bw-lab-results-bundle"];
fhir:Bundle.type [ fhir:value "transaction"];
fhir:Bundle.entry [
fhir:index 0;
fhir:Bundle.entry.resource [
a fhir:Patient;
fhir:Resource.id [ fhir:value "example-ipms-patient" ];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-patient";
fhir:index 0;
fhir:link <http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-patient> ] ];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"example-ipms-patient\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-bw-patient.html\">Botswana Patient</a></p></div><p><b>identifier</b>: MR: urn:uuid:<IPMS Patient ID>, id: <OmangNumber> (OFFICIAL)</p><p><b>name</b>: Demo IpmsPatient (OFFICIAL)</p><p><b>gender</b>: male</p><p><b>birthDate</b>: 1948-01-22</p><p><b>managingOrganization</b>: <a href=\"Organization-example-facility-order-reciever.html\">Organization/example-facility-order-reciever</a></p></div>" ];
fhir:Patient.identifier [
fhir:index 0;
fhir:Identifier.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.code [ fhir:value "MR" ] ] ];
fhir:Identifier.system [ fhir:value "urn:ietf:rfc:3986" ];
fhir:Identifier.value [ fhir:value "urn:uuid:<IPMS Patient ID>" ] ], [
fhir:index 1;
fhir:Identifier.use [ fhir:value "official" ];
fhir:Identifier.system [ fhir:value "http://moh.bw.org/ext/identifier/omang" ];
fhir:Identifier.value [ fhir:value "<OmangNumber>" ] ];
fhir:Patient.name [
fhir:index 0;
fhir:HumanName.use [ fhir:value "official" ];
fhir:HumanName.family [ fhir:value "IpmsPatient" ];
fhir:HumanName.given [
fhir:value "Demo";
fhir:index 0 ] ];
fhir:Patient.gender [ fhir:value "male" ];
fhir:Patient.birthDate [ fhir:value "1948-01-22"^^xsd:date ];
fhir:Patient.managingOrganization [
fhir:Reference.reference [ fhir:value "Organization/example-facility-order-reciever" ] ] ];
fhir:Bundle.entry.request [
fhir:Bundle.entry.request.method [ fhir:value "PUT" ];
fhir:Bundle.entry.request.url [ fhir:value "Patient/example-ipms-patient" ] ]
], [
fhir:index 1;
fhir:Bundle.entry.resource [
a fhir:ServiceRequest;
fhir:Resource.id [ fhir:value "example-bw-ipms-service-request" ];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-basic-service-request";
fhir:index 0;
fhir:link <http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-basic-service-request> ] ];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"example-bw-ipms-service-request\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-bw-basic-service-request.html\">Basic Botswana Lab Service Request</a></p></div><p><b>status</b>: active</p><p><b>intent</b>: order</p><p><b>code</b>: SARS-CoV-2 PCR <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (pims-lab-test-code#COVID)</span></p><p><b>subject</b>: <a href=\"#Patient_example-ipms-patient\">See above (Patient/example-ipms-patient)</a></p></div>" ];
fhir:ServiceRequest.status [ fhir:value "active" ];
fhir:ServiceRequest.intent [ fhir:value "order" ];
fhir:ServiceRequest.code [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://moh.bw.org/ext/laboratory/pims-lab-test-code" ];
fhir:Coding.code [ fhir:value "COVID" ];
fhir:Coding.display [ fhir:value "SARS-CoV-2 PCR" ] ] ];
fhir:ServiceRequest.subject [
fhir:Reference.reference [ fhir:value "Patient/example-ipms-patient" ] ] ];
fhir:Bundle.entry.request [
fhir:Bundle.entry.request.method [ fhir:value "PUT" ];
fhir:Bundle.entry.request.url [ fhir:value "ServiceRequest/example-bw-ipms-service-request" ] ]
], [
fhir:index 2;
fhir:Bundle.entry.resource [
a fhir:DiagnosticReport;
fhir:Resource.id [ fhir:value "example-bw-ipms-diagnostic-report" ];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-lab-diagnostic-report";
fhir:index 0;
fhir:link <http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-lab-diagnostic-report> ] ];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"example-bw-ipms-diagnostic-report\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-bw-lab-diagnostic-report.html\">Botswana Lab Diagnostic Report</a></p></div><p><b>identifier</b>: FILL: ?ngen-9?</p><p><b>status</b>: final</p><p><b>category</b>: LAB <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#LAB)</span></p><p><b>code</b>: SARS-CoV-2 PCR <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#COVID)</span></p><p><b>subject</b>: <a href=\"example-ipms-patient\">example-ipms-patient</a></p><p><b>effective</b>: 2021-06-03T14:00:00Z</p><p><b>result</b>: </p><ul><li><a href=\"#Observation_example-bw-ipms-obs-1\">See above (Observation/example-bw-ipms-obs-1)</a></li><li><a href=\"#Observation_example-bw-ipms-obs-2\">See above (Observation/example-bw-ipms-obs-2)</a></li></ul></div>" ];
fhir:DiagnosticReport.identifier [
fhir:index 0;
fhir:Identifier.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.code [ fhir:value "FILL" ] ], [
fhir:index 1;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0203" ] ] ] ];
fhir:DiagnosticReport.status [ fhir:value "final" ];
fhir:DiagnosticReport.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.code [ fhir:value "LAB" ] ] ];
fhir:DiagnosticReport.code [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "L" ];
fhir:Coding.code [ fhir:value "COVID" ];
fhir:Coding.display [ fhir:value "SARS-CoV-2 PCR" ] ] ];
fhir:DiagnosticReport.subject [
fhir:Reference.reference [ fhir:value "example-ipms-patient" ];
fhir:Reference.type [ fhir:value "Patient" ] ];
fhir:DiagnosticReport.effectiveDateTime [ fhir:value "2021-06-03T14:00:00.000Z"^^xsd:dateTime ];
fhir:DiagnosticReport.result [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Observation/example-bw-ipms-obs-1" ];
fhir:Reference.type [ fhir:value "Observation" ] ], [
fhir:index 1;
fhir:Reference.reference [ fhir:value "Observation/example-bw-ipms-obs-2" ];
fhir:Reference.type [ fhir:value "Observation" ] ] ];
fhir:Bundle.entry.request [
fhir:Bundle.entry.request.method [ fhir:value "PUT" ];
fhir:Bundle.entry.request.url [ fhir:value "DiagnosticReport/example-bw-ipms-diagnostic-report" ] ]
], [
fhir:index 3;
fhir:Bundle.entry.resource [
a fhir:Observation;
fhir:Resource.id [ fhir:value "example-bw-ipms-obs-1" ];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-lab-observation";
fhir:index 0;
fhir:link <http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-lab-observation> ] ];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"example-bw-ipms-obs-1\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-bw-lab-observation.html\">Botswana Lab Observation</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: SARS-CoV-2 PCR <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#COVID)</span></p><p><b>subject</b>: <a href=\"#Patient_example-ipms-patient\">See above (Patient/example-ipms-patient)</a></p><p><b>effective</b>: 2021-06-10T15:49:00Z</p><p><b>performer</b>: <a href=\"Organization-example-facility-order-reciever.html\">Organization/example-facility-order-reciever</a></p><p><b>value</b>: INCONCLUSIVE</p><p><b>interpretation</b>: Normal <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v3-ObservationInterpretation.html\">ObservationInterpretation</a>#N)</span></p></div>" ];
fhir:Observation.status [ fhir:value "final" ];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ];
fhir:Coding.code [ fhir:value "laboratory" ] ] ];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "L" ];
fhir:Coding.code [ fhir:value "COVID" ];
fhir:Coding.display [ fhir:value "SARS-CoV-2 PCR" ] ] ];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/example-ipms-patient" ];
fhir:Reference.type [ fhir:value "Patient" ] ];
fhir:Observation.effectiveDateTime [ fhir:value "2021-06-10T15:49:00.000Z"^^xsd:dateTime ];
fhir:Observation.performer [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Organization/example-facility-order-reciever" ] ];
fhir:Observation.valueString [ fhir:value "INCONCLUSIVE" ];
fhir:Observation.interpretation [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" ];
fhir:Coding.code [ fhir:value "N" ];
fhir:Coding.display [ fhir:value "Normal" ] ] ] ];
fhir:Bundle.entry.request [
fhir:Bundle.entry.request.method [ fhir:value "PUT" ];
fhir:Bundle.entry.request.url [ fhir:value "Observation/example-bw-ipms-obs-1" ] ]
], [
fhir:index 4;
fhir:Bundle.entry.resource [
a fhir:Observation;
fhir:Resource.id [ fhir:value "example-bw-ipms-obs-2" ];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-lab-observation";
fhir:index 0;
fhir:link <http://b-techbw.github.io/bw-lab-ig/StructureDefinition/bw-lab-observation> ] ];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"example-bw-ipms-obs-2\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-bw-lab-observation.html\">Botswana Lab Observation</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: SARS-CoV-2 PCR REVIEW <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#S-Cov-2-RVW)</span></p><p><b>subject</b>: <a href=\"#Patient_example-ipms-patient\">See above (Patient/example-ipms-patient)</a></p><p><b>effective</b>: 2021-06-10T15:49:00Z</p><p><b>performer</b>: <a href=\"Organization-example-facility-order-reciever.html\">Organization/example-facility-order-reciever</a></p><p><b>value</b>: .</p><p><b>interpretation</b>: Normal <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v3-ObservationInterpretation.html\">ObservationInterpretation</a>#N)</span></p></div>" ];
fhir:Observation.status [ fhir:value "final" ];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ];
fhir:Coding.code [ fhir:value "laboratory" ] ] ];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "L" ];
fhir:Coding.code [ fhir:value "S-Cov-2-RVW" ];
fhir:Coding.display [ fhir:value "SARS-CoV-2 PCR REVIEW" ] ] ];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/example-ipms-patient" ];
fhir:Reference.type [ fhir:value "Patient" ] ];
fhir:Observation.effectiveDateTime [ fhir:value "2021-06-10T15:49:00.000Z"^^xsd:dateTime ];
fhir:Observation.performer [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Organization/example-facility-order-reciever" ] ];
fhir:Observation.valueString [ fhir:value "." ];
fhir:Observation.interpretation [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" ];
fhir:Coding.code [ fhir:value "N" ];
fhir:Coding.display [ fhir:value "Normal" ] ] ] ];
fhir:Bundle.entry.request [
fhir:Bundle.entry.request.method [ fhir:value "PUT" ];
fhir:Bundle.entry.request.url [ fhir:value "Observation/example-bw-ipms-obs-2" ] ]
].
# - ontology header ------------------------------------------------------------
a owl:Ontology;
owl:imports fhir:fhir.ttl.