Botswana Laboratory HIE Workflow Implementation Guide
0.2.0 - ci-build

Botswana Laboratory HIE Workflow Implementation Guide - Local Development build (v0.2.0). See the Directory of published versions

: PIMS tblkLabTest <-> LOINC - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ConceptMap;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "BwPimsLabTestLoincCM"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>BwPimsLabTestLoincCM (http://b-techbw.github.io/bw-lab-ig/ConceptMap/BwPimsLabTestLoincCM)</h2><p>Mapping from <a href=\"ValueSet-bw-pims-lab-test-vs.html\">http://b-techbw.github.io/bw-lab-ig/ValueSet/bw-pims-lab-test-vs</a> to <a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v3-loinc.html\">http://loinc.org</a></p><p>DRAFT (not intended for production usage). Published on 2022-02-05 01:33:00+0000 by B-TECHBW (B-TECHBW: <a href=\"www.github.com/b-techbw\">www.github.com/b-techbw</a>, <a href=\"mailto:pmanko@uw.edu\">pmanko@uw.edu</a>). </p><br/><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Destination Code</b></td></tr><tr><td colspan=\"3\">Mapping from <a href=\"ValueSet-bw-pims-lab-test-vs.html\">PIMS Lab Test Codes</a> to <a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v3-loinc.html\">Logical Observation Identifiers, Names and Codes (LOINC)</a></td></tr><tr><td>CD4</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>24467-3 (CD3+CD4+ (T4 helper) cells [#/volume] in Blood)</td></tr><tr><td>CD4%</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>8123-2 (CD3+CD4+ (T4 helper) cells/100 cells in Blood)</td></tr><tr><td>VL</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>20447-9 (HIV 1 RNA [#/volume] (viral load) in Serum or Plasma by NAA with probe detection)</td></tr><tr><td>PCV</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>1298-9 (Packed erythrocytes given [Volume])</td></tr><tr><td>WBC</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>26464-8 (Leukocytes [#/volume] in Blood)</td></tr><tr><td>NP%</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>32200-8 (Segmented neutrophils/100 leukocytes in Blood by Automated count)</td></tr><tr><td>AST</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>1920-8 (Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma)</td></tr><tr><td>GGT</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>2324-2 (Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma)</td></tr><tr><td>ALPL</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>6768-6 (Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma)</td></tr><tr><td>LIP</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>3040-3 (Lipase [Enzymatic activity/volume] in Serum or Plasma)</td></tr><tr><td>TGS</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>2571-8 (Triglyceride [Mass/volume] in Serum or Plasma)</td></tr><tr><td>Urea</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>3092-4 (Urea [Mass/volume] in Urine)</td></tr><tr><td>Na</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>2951-2 (Sodium [Moles/volume] in Serum or Plasma)</td></tr><tr><td>K</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>2823-3 (Potassium [Moles/volume] in Serum or Plasma)</td></tr><tr><td>MCV</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equal\">is equal to</a></td><td>30428-7 (MCV [Entitic volume])</td></tr></table></div>"
  ];
  fhir:ConceptMap.url [ fhir:value "http://b-techbw.github.io/bw-lab-ig/ConceptMap/BwPimsLabTestLoincCM"];
  fhir:ConceptMap.version [ fhir:value "0.2.0"];
  fhir:ConceptMap.name [ fhir:value "BwPimsLabTestLoincCM"];
  fhir:ConceptMap.status [ fhir:value "draft"];
  fhir:ConceptMap.experimental [ fhir:value "true"^^xsd:boolean];
  fhir:ConceptMap.date [ fhir:value "2022-02-05T01:33:00+00:00"^^xsd:dateTime];
  fhir:ConceptMap.publisher [ fhir:value "B-TECHBW"];
  fhir:ConceptMap.contact [
     fhir:index 0;
     fhir:ContactDetail.name [ fhir:value "B-TECHBW" ];
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "www.github.com/b-techbw" ]     ], [
       fhir:index 1;
       fhir:ContactPoint.system [ fhir:value "email" ];
       fhir:ContactPoint.value [ fhir:value "pmanko@uw.edu" ]     ]
  ];
  fhir:ConceptMap.jurisdiction [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://unstats.un.org/unsd/methods/m49/m49.htm" ];
       fhir:Coding.code [ fhir:value "072" ]     ]
  ], [
     fhir:index 1;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "urn:iso:std:iso:3166" ];
       fhir:Coding.code [ fhir:value "BW" ]     ]
  ];
  fhir:ConceptMap.sourceCanonical [
     fhir:value "http://b-techbw.github.io/bw-lab-ig/ValueSet/bw-pims-lab-test-vs";
     fhir:link <http://b-techbw.github.io/bw-lab-ig/ValueSet/bw-pims-lab-test-vs>
  ];
  fhir:ConceptMap.targetUri [ fhir:value "http://loinc.org"];
  fhir:ConceptMap.group [
     fhir:index 0;
     fhir:ConceptMap.group.source [ fhir:value "http://b-techbw.github.io/bw-lab-ig/ValueSet/bw-pims-lab-test-vs" ];
     fhir:ConceptMap.group.target [ fhir:value "http://loinc.org" ];
     fhir:ConceptMap.group.element [
       fhir:index 0;
       fhir:ConceptMap.group.element.code [ fhir:value "CD4" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "24467-3" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 1;
       fhir:ConceptMap.group.element.code [ fhir:value "CD4%" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "8123-2" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 2;
       fhir:ConceptMap.group.element.code [ fhir:value "VL" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "20447-9" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 3;
       fhir:ConceptMap.group.element.code [ fhir:value "PCV" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "1298-9" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 4;
       fhir:ConceptMap.group.element.code [ fhir:value "WBC" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "26464-8" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 5;
       fhir:ConceptMap.group.element.code [ fhir:value "NP%" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "32200-8" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 6;
       fhir:ConceptMap.group.element.code [ fhir:value "AST" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "1920-8" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 7;
       fhir:ConceptMap.group.element.code [ fhir:value "GGT" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "2324-2" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 8;
       fhir:ConceptMap.group.element.code [ fhir:value "ALPL" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "6768-6" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 9;
       fhir:ConceptMap.group.element.code [ fhir:value "LIP" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "3040-3" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 10;
       fhir:ConceptMap.group.element.code [ fhir:value "TGS" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "2571-8" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 11;
       fhir:ConceptMap.group.element.code [ fhir:value "Urea" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "3092-4" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 12;
       fhir:ConceptMap.group.element.code [ fhir:value "Na" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "2951-2" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 13;
       fhir:ConceptMap.group.element.code [ fhir:value "K" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "2823-3" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ], [
       fhir:index 14;
       fhir:ConceptMap.group.element.code [ fhir:value "MCV" ];
       fhir:ConceptMap.group.element.target [
         fhir:index 0;
         fhir:ConceptMap.group.element.target.code [ fhir:value "30428-7" ];
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equal" ]       ]     ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.